Load and analysis data from publication resources, such as GEO.

In Brief

  • Download data of GEO.

  • Load data step by step.

Protocol

Download Data

  • Enter and search GEO accession: GSE121720.

    searchgse

  • Download and save related data for GSE121720.

    GSE121720

Load data

  • Click on VIEW MY DATA.

  • Click on LOAD DATA on the right of My computer hub.

    step1

  • Click on Select Data File.

  • Choose GSE121720_phenotype.txt.

  • Click on ‘NEXT’

  • Choose Phenotypic data: categories or non-genomic in a rectangle (e.g. age, mutation status: 'wt' or 'mutant').

    step2

  • Click on ‘Next’

  • Choose The first row is sample IDs

    step3

  • Click on ‘Next’

  • Choose These are the first data on these samples.

  • Click on IMPORT

    step4

  • Choose LOAD MORE DATA.

    step5

  • Click on Select Data File.

  • Choose GSE121720_RNAseq_expression_matrix_TPM.txt.

  • Click on ‘Next’

  • Choose Genomic data: numbers in a rectangle (e.g. expression).

    step6

  • Click on ‘Next’

  • Choose The first row is sample IDs.

  • Click on ‘Next’

  • Choose I have loaded other data on these samples and want to connect to it.

  • Select a study and choose My Study.

  • Click on ADVANCED

    step7

  • Click on IMPORT

    step8

  • Click on FINISH

    step9

  • Click on VISUALIZE to continue to do interested analysis.

Output

figure